OverviewMk1b StatusStart seq.Start test runSeq. runsResultsAnalyzeEpiDiP UMAPEpiDiP AnnotateEpiDiP CNVPEpiDiP reportbisDiP reportAbout NanoDiP

NanoDiP is a tool to obtain and analyze low-coverage whole genome nanopore sequencing information through bascalling, genomic alignment, copy number extrapolation, and unsupervised machine learning by UMAP-based dimensions reduction. It is the nanopore-centered implementation of EpiDiP which stands for Epigenomic Digital Pathology. NanoDiP hence abbreviates Nanopore Digital Pathology.

Nanopore sequencing is developed and sold by ONT. Then authors of this software are not affiliated with ONT.

This software is licensed under the GPLv3. By using this program, you agree to the terms specified herein.

This software is not a medical device. Its use occurs in the sole responsibility of the treating physician. The authors shall not be held liable for any damage caused by this software. Basic understanding of how this system works and internal validation are strongly advised before implementation in a diagnostic setting.